Prototype Selection Using Topological Data Analysis

Statistics > Machine Learning [Submitted on 6 Nov 2025 (v1), last revised 30 May 2026 (this version, v2)] Title:Prototype Selection Using Topological Data Analysis View PDF HTML (experimental)Abstract:Prototype selection methods compress a training set, but the existing taxonomy of condensation, edition, hybrid, competence-based, optimization-based, and clustering-based families does not include methods that operate on the multi-scale topological structure of the data. This paper introduces two different persistence-based prototype selector variants, Topological Prototype Selector (TPS) and Boundary-Conscious Topological Prototype Selector (BoundaryTPS). TPS uses two sequential Rips filtrations to retain boundary-relevant and interior-typical points. BoundaryTPS is a single-stage variant whose vertex-weighted filtration concentrates retention near the decision boundary. We evaluate both methods against seven classical baselines on fifteen real datasets and find that the topological methods occupy a different operating point in the prototype-selection design space than existing methods. BoundaryTPS achieves the lowest mean Friedman rank on $H_1$ persistence-diagram preservation and is significantly better than five of the seven baselines (Nemenyi, $\alpha = 0.05$). TPS ranks third on the same endpoint. Both methods are more stable under fold perturbation than any chained-decision selector tested, and both inherit the source set's class proportions without label-aware machinery. On aggregate G-Mean both methods are competitive but not leading, with rank-1 frequencies of $11.3\%$ (TPS) and $9.9\%$ (BoundaryTPS) across fold combinations. Empirically, both methods scale sub-quadratically in sample size. Submission history From: Jordan Eckert [view email][v1] Thu, 6 Nov 2025 23:21:43 UTC (25,089 KB) [v2] Sat, 30 May 2026 21:35:26 UTC (4,947 KB) Current browse context: stat.ML References & Citations Loading... Bibliographic and Citation Tools Bibliographic Explorer (What is the Explorer?) Connected Papers (What is Connected Papers?) Litmaps (What is Litmaps?) scite Smart Citations (What are Smart Citations?) Code, Data and Media Associated with this Article alphaXiv (What is alphaXiv?) CatalyzeX Code Finder for Papers (What is CatalyzeX?) DagsHub (What is DagsHub?) Gotit.pub (What is GotitPub?) Hugging Face (What is Huggingface?) ScienceCast (What is ScienceCast?) Demos Recommenders and Search Tools Influence Flower (What are Influence Flowers?) CORE Recommender (What is CORE?) arXivLabs: experimental projects with community collaborators arXivLabs is a framework that allows collaborators to develop and share new arXiv features directly on our website. Both individuals and organizations that work with arXivLabs have embraced and accepted our values of openness, community, excellence, and user data privacy. arXiv is committed to these values and only works with partners that adhere to them. Have an idea for a project that will add value for arXiv's community? Learn more about arXivLabs.